Coral diseases are increasing throughout the Karimunjawa archipelago because of local
anthropogenic stressors concomitant with alterations in coral cover. The present study was carried
out to quantify the indicators of coral cover and Acroporid White Syndrome (AWS) prevalence in
cruise line waters. The coral cover was calculated based on an Underwater Photo Transect (UPT)
survey. Prevalence of AWS was determined by calculating the amount of Acroporid coral affected
by AWS disease divided by total coral colonies per 50 m2 transect quadrant. Results of the study
showed that 98 out of a total of 1686 coral colonies were affected by AWS diseases. Prevalence
of all AWS diseases observed was 4.99 ± 3.11% SE. There was no significant difference between
coral disease prevalence in the cruise line and non-cruise line areas (P-value = 0.667, >0.05).
However, a significant difference was found among site locations (P-value = 0.001, <0.05). There
was a highly significant correlation between the percentage of coral cover and AWS prevalence
(r = 0.775; P-value = 0.004). Although statistically not significant, a higher prevalence of diseases
was observed in sites with a close proximity with to shipping lines. More extensive monitoring
on several islands with longer intervals are recommended in the shipping routes. The increase of
coral cover might be resulting in the high prevalence of coral disease occurrence.