Angelica sinensis is a well-known traditional Chinese food and medicine that is often misused or
intentionally substituted on the market. DNA samples from 6 A. sinensis cultivars and 23 related species were used
to develop an efficient sequence-characterized amplified region (SCAR) marker. Eighteen inter simple sequence repeat
(ISSR) primer-amplified bands were highly polymorphic (83.0%). The ISSR primer UBC826 amplified a specific
fragment of 899 bp (GenBank accession no. KP789480) only from A. sinensis. The fragment was eluted, purified,
cloned, and sequenced. One set of SCAR primers (UBC826 L/UBC826R), developed from the sequence information of
the fragment, was found to be specific to A. sinensis and produced an amplicon of 749 bp in size. Furthermore, a new
method for DNA extraction of Chinese patent medicines was developed, and 5 Chinese patent medicines containing
A. sinensis were used for efficient detection of the A. sinensis-specific marker. The ISSR-based SCAR marker was
developed and easily tested by PCR amplification. This marker provides an effective and precise PCR-based diagnostic
method and might be conducive to raw material production and quality control for A. sinensis.